You have to upload your "game.rxdata" file. Located in: Local Disk (C:) > Users > [Your Username] > Saved Games > Pokemon Reborn - and select 'game.rxdata'. If you have any other questions check this.
I don't remember in what game,but I have seen that they have changed the HMs into items. So for example Cut was a sword, so instead of waisting a move slot on a pokemon, the trainer would use the sword to cut things. So maybe something like that would work.
But tbh I like it the way it is. It can make a fight interesting when you get caught off guard with two lvl 15 Bidoof's