not sure if this gets fixed by interacting with the bed in the manor(since I'm not there yet), but I was playing on the previous version until a buddy of mine pointed out there was a new version with a new game engine. I converted my save mostly without issue, except for not having the quest log at the moment. i got curious about how the jungle you start the game in looked and if i may have missed some items or whatever there, but when walking around i noticed that the event flags got reactivated while already being past them in the story. this caused the game to softlock since some of the events start looping. it might also block you out of earlier areas if the vileplume and trees are also back in place, if they are still there in this version.