This seems to be like nothing more than a hazy collection of a generic idea and desires. Hammer out some solid ideas for what kind of story you want this game to have and then put together a solid flow of events. If you ever need someone to shoot ideas back and forth then you can always PM me, I won't bite!
Pokemon Fangames are a dime a dozen these days because of RPGM and Essentials. If you want your game to be worth more than a fraction of a penny then you should probably look into some features or story ideas that have rarely/never been explored before such as morally ambiguous enemy teams and allowing players to choose what they do instead of having them pulled around by the good guys.
Wow, this definitely looks very polished! Maybe it's silly to say this because of only aesthetic appeal but your game definitely outshines the others around here, including Reborn and Rejuvenation which I am currently playing. Are you perhaps hoping to go into game design some day?
Field effects work through scripts. You may want to study up on Ruby and looking at you Reborn's Field effects are written before delving too deeply into something. Other than that, good luck! ^^
Oh wow, if only I had made this account a bit sooner! Anyway, congrats to all who got a position, hope you continue to do great things for the community.